Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CRC rs6867340 chr5:54670831 A/G 4.97E-5 373 22.32 22.67 14.05 KM Plot
CRC rs6885563 chr5:54670777 G/A 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs6886428 chr5:54670571 C/A 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs6887139 chr5:54662211 A/G 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs6889307 chr5:54666919 T/G 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs6903373 chr6:3702681 C/T 2.43E-6 374 22.35 22.35 3.97 KM Plot
CRC rs6952614 chr7:57710471 A/G 1.96E-6 371 11.92 20.58 23.3 KM Plot
CRC rs6957358 chr7:57710410 T/C 1.9E-5 369 12.6 20.38 23.37 KM Plot
CRC rs6962024 chr7:57711046 T/C 1.96E-6 371 11.92 20.58 23.3 KM Plot
CRC rs6962105 chr7:57829001 C/T 1.55E-5 374 11.27 20.38 23.37 KM Plot
CRC rs6963515 chr7:57756929 G/A 2.03E-5 363 12.57 20.3 23.37 KM Plot
CRC rs6967182 chr7:57829905 T/C 1.39E-5 372 23.37 20.3 11.92 KM Plot
CRC rs7028020 chr9:38007747 C/T 4.28E-5 374 16.65 24.7 22.3 KM Plot
CRC rs71050829 chr7:62108924 CA/C 6.59E-7 369 24.2 20.23 11.27 KM Plot
CRC rs71074376 chr12:59969596 G/GT 1.09E-5 373 10.4 18.13 24.63 KM Plot